Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs2238531 chr16:89856217 C/G 0.000159 177 25.87 20.37 36.37 KM Plot
PCPG rs2238532 chr16:89863672 T/C 0.000186 173 25.87 21.5 36.37 KM Plot
PCPG rs2239356 chr16:89827239 T/C 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs2239357 chr16:89827251 G/A 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs2239358 chr16:89827330 C/G 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs2240773 chr17:74710783 C/A 0.000139 177 26.27 14.35 13.5 KM Plot
PCPG rs2241037 chr16:90101827 C/T 7.58E-9 177 25.87 20.28 6.62 KM Plot
PCPG rs2248420 chr21:34605778 C/T 0.000273 173 23.43 31.97 25.17 KM Plot
PCPG rs2254780 chr2:136435526 C/T 0.00021 178 25.53 25.67 14.5 KM Plot
PCPG rs2257294 chr13:114157724 G/A 3.85E-12 178 24.23 29.57 3.32 KM Plot
PCPG rs2257298 chr13:114157569 G/T 3.85E-12 178 24.23 29.57 3.32 KM Plot
PCPG rs2258299 chr13:114167971 G/A 3.87E-12 178 24.17 29.95 3.32 KM Plot
PCPG rs2258368 chr13:114167414 C/T 3.87E-12 178 24.17 29.95 3.32 KM Plot
PCPG rs2258373 chr13:114167313 G/A 3.87E-12 178 24.17 29.95 3.32 KM Plot
PCPG rs2258375 chr13:114167187 A/G 3.87E-12 178 24.17 29.95 3.32 KM Plot